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Protein

DNA-directed RNA polymerase subunit beta

Gene
N/A
Organism
Leersia perrieri
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferaseUniRule annotation, Transferase
Biological processTranscription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit betaUniRule annotation (EC:2.7.7.6UniRule annotation)
OrganismiLeersia perrieriImported
Taxonomic identifieri77586 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeLeersia
Proteomesi
  • UP000032180 Componenti: Chromosome 1

Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymeraseUniRule annotation

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini49 – 345RNA_pol_Rpb2_1InterPro annotationAdd BLAST297
    Domaini165 – 296RNA_pol_Rpb2_2InterPro annotationAdd BLAST132
    Domaini371 – 435RNA_pol_Rpb2_3InterPro annotationAdd BLAST65
    Domaini472 – 517RNA_pol_Rpb2_4InterPro annotationAdd BLAST46
    Domaini519 – 540RNA_pol_Rpb2_5InterPro annotationAdd BLAST22
    Domaini541 – 885RNA_pol_Rpb2_6InterPro annotationAdd BLAST345
    Domaini887 – 977RNA_pol_Rpb2_7InterPro annotationAdd BLAST91

    Sequence similaritiesi

    Belongs to the RNA polymerase beta chain family.UniRule annotation

    Family and domain databases

    CDDicd00653 RNA_pol_B_RPB2, 1 hit
    Gene3Di2.40.270.10, 2 hits
    2.40.50.150, 2 hits
    3.90.1110.10, 1 hit
    InterProiView protein in InterPro
    IPR015712 DNA-dir_RNA_pol_su2
    IPR007120 DNA-dir_RNAP_su2_dom
    IPR037033 DNA-dir_RNAP_su2_hyb_sf
    IPR007121 RNA_pol_bsu_CS
    IPR007644 RNA_pol_bsu_protrusion
    IPR007642 RNA_pol_Rpb2_2
    IPR037034 RNA_pol_Rpb2_2_sf
    IPR007645 RNA_pol_Rpb2_3
    IPR007646 RNA_pol_Rpb2_4
    IPR007647 RNA_pol_Rpb2_5
    IPR007641 RNA_pol_Rpb2_7
    IPR014724 RNA_pol_RPB2_OB-fold
    PANTHERiPTHR20856 PTHR20856, 4 hits
    PfamiView protein in Pfam
    PF04563 RNA_pol_Rpb2_1, 1 hit
    PF04561 RNA_pol_Rpb2_2, 1 hit
    PF04565 RNA_pol_Rpb2_3, 1 hit
    PF04566 RNA_pol_Rpb2_4, 1 hit
    PF04567 RNA_pol_Rpb2_5, 1 hit
    PF00562 RNA_pol_Rpb2_6, 1 hit
    PF04560 RNA_pol_Rpb2_7, 1 hit
    PROSITEiView protein in PROSITE
    PS01166 RNA_POL_BETA, 1 hit

    Sequencei

    Sequence statusi: Complete.

    A0A0D9V0W9-1 [UniParc]FASTAAdd to basket

    « Hide

            10         20         30         40         50
    MAIAAAADDG AKEAPPPPPP SPTYRSLAAP VANPVDKFAL LPAFLKVRGL
    60 70 80 90 100
    VKEHIDSFNY FITKGIRIVV QANNRIEYKN VKVGQPSVKF EYNVEKITPQ
    110 120 130 140 150
    YSAPVMVDIE YTVGKHYELK MKQDFIIGYL PIMLKSHACV LSRKDEAELA
    160 170 180 190 200
    RYGECPLDPG GYFIVKGTEK IPIIVVMKAM GIESDQEVVQ MVGRDPRYGD
    210 220 230 240 250
    LLYPSIQECA FERIYTQEQA LQYMDDKVMY PGTGTQKEGR SKSILRDVFV
    260 270 280 290 300
    AHVLVNSGNF RPKCIYTTVM IRRMMDAILN ADTFDDKDYV GNKRLELSGQ
    310 320 330 340 350
    LISLLFEDLF KTMNSNAVER LNHSSGKLHS SPLDLSQYIN EEIITHGLER
    360 370 380 390 400
    AISTGNWDIK RFRMHRKGVS QVLSRLSYMA SLGYMTRITP HFEKNRKTSG
    410 420 430 440 450
    PRALQPSQWG MLCPCDTPEG EACGLTKNLS LLTHVTTDQE EGPLMNLCYS
    460 470 480 490 500
    LGVEDLSLLS GEEIHAPGSF FVMFNGLILG KHRRPQRFAN TMRKLRRSGN
    510 520 530 540 550
    IGEFVSIFVN EKQDGIRSFD DFLRDGLIEY LDVNEENNAL LSRADSLLYL
    560 570 580 590 600
    LVYAQRPLLT TKTIELVGYD KLGAGQNATV AIMSYSGYDI EDAIVMNKSS
    610 620 630 640 650
    LDRGFGRCIA MKKYTVTKEK YENGWSDRIV MPQRDKNGSL LKHNMQALDE
    660 670 680 690 700
    DGFAAPGVII RNHDIYVNKQ TPKNTTKQCG ARPTDMDYKD SPAVYKGDDG
    710 720 730 740 750
    ETTVVDRVML CSDTNDKLII KCIIRHTRRP EVGDKFSSRH GQKGVCGTIV
    760 770 780 790 800
    QQEDFPFSES GICPDLIMNP HGFPSRMTIG KMIELLGGKA GVSCGQFHYG
    810 820 830 840 850
    SAFGEPSGNA DKVEDISYTL VKHGFSYNGK DFLYSGILGH PCQAYIFMGP
    860 870 880 890 900
    IYYQKLKHMV LDKMHARASG PRVLLTRQPT EGRSRDGGLR LGEMERDCLI
    910 920 930 940 950
    AYGASMLIFE RLLISSDPYQ VQVCRNCGLL GYYNHRLKAS YCSMCKNGEN
    960 970 980
    MAKMKMPYAC KLLFQELQAM NIVPRLKLTE G
    Length:981
    Mass (Da):110,193
    Last modified:May 27, 2015 - v1
    Checksum:i74B3446A2CA2666B
    GO

    Genome annotation databases

    EnsemblPlantsiLPERR01G13780.10; LPERR01G13780.10; LPERR01G13780
    GrameneiLPERR01G13780.10; LPERR01G13780.10; LPERR01G13780

    Similar proteinsi

    Entry informationi

    Entry nameiA0A0D9V0W9_9ORYZ
    AccessioniPrimary (citable) accession number: A0A0D9V0W9
    Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
    Last sequence update: May 27, 2015
    Last modified: April 25, 2018
    This is version 21 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

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